i guess my memory is failing me, on the 249 i split the transom vertically, outer layer 3 pieces with center piece 4' wide, inner layer 3 pieces split in the center, so it really does not apply to your project.
but if i were doing it i would use a similar technique, outer layer split horizontally with the seam as high as possible, and inner layer with the seam lower, 6" or more offset in possible.
are you using marine ply or composite ?